• smcsmc [c++, python] Inference of the ancestral recombination graph and demographic events from whole genome sequence data.
  • stdpopsim [python] A community-maintained standard library of population genetic models.
  • aavcf [c++] A small convenience tool to swap allelic encodings.
  • goldi [c++, R] Identification of multi-word terms (such as in Gene Ontology) in free form text with application to the biomedical literature.
  • yamldoc [python] A dependency free documentation generator for YAML formatted data.

Web tools

  • allerID [R, shiny] A flexible tool to identify allergens in lists of ingredients.